STRINGSTRING
SIT45000.1 SIT45000.1 spaQ spaQ spaR spaR spaP spaP eprH eprH invA invA prgI prgI bsaO bsaO SIT44967.1 SIT44967.1 SIT38164.1 SIT38164.1 SIT42096.1 SIT42096.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT45000.1Type III secretion system BasJ. (269 aa)    
Predicted Functional Partners:
spaQ
Surface presentation of antigens protein SpaQ.
 
 
 0.998
spaR
Surface presentation of antigens protein SpaR.
 
 
 0.997
spaP
Surface presentation of antigens protein SpaP.
 
 
 0.996
eprH
Type III secretion apparatus protein PrgH/EprH.
  
 
 0.993
invA
Invasion protein InvA.
 
 
 0.988
prgI
Protein PrgI.
  
 
 0.988
bsaO
Type III secretion system protein.
 
 
 0.985
SIT44967.1
Type III secretion low calcium response chaperone LcrH/SycD.
 
  
 0.972
SIT38164.1
General secretion pathway protein D.
  
 
 0.916
SIT42096.1
General secretion pathway protein D.
  
 
 0.916
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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